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An Open Compendium of Soil Sample and Soil Profile Datasets

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Rationale

Access source code This is a public compendium of global, regional, national and sub-national soil samples and/or soil profile datasets (points with Observations and Measurements of soil properties and characteristics). Datasets listed here, assuming compatible open data license, are afterwards imported into the Global compilation of soil chemical and physical properties and soil classes and eventually used to create a better open soil information across countries. The specific objectives of this initiative are:

  • To enable data digitization, import and binding + harmonization,
  • To accelerate research collaboration and networking,
  • To enable development of more accurate / more usable global and regional soil property and class maps (typically published via https://OpenLandMap.org),

Download compiled data

Compiled data (imported, standardized, quality-controlled) is available through a diversity of standard formats:

  • RDS file (native R data format);
  • GPKG file (Geopackage file ready to be opened in QGIS);

All files can be downloaded from the /out directory.

Add your own data

The minimum requirements to submit a dataset for inclusion to the OpenLandMap repository are:

  • License and terms of use clearly specified AND,
  • Complete and consistent metadata that can ensure correct standardization and harmonization steps AND,
  • At least 50 unique spatial locations AND,
  • No broken or invalid URLs,

Datasets that do NOT satisfy the above listed minimum requirements might be removed. If you discover an issue with license, data description or version number of a dataset, please open a Github issue.

Soil profiles and soil samples with chemical and physical properties global compilation. For more info see: https://gitlab.com/openlandmap/compiled-ess-point-data-sets.

Figure 0.1: Soil profiles and soil samples with chemical and physical properties global compilation. For more info see: https://gitlab.com/openlandmap/compiled-ess-point-data-sets.

Recommended settings for all datasets are:

  • Peer-reviewed versions of the datasets (i.e. a dataset accompanied with a peer-reviewed publication) should have the priority,
  • Register your dataset (use e.g. https://zenodo.org) and assign a DOI to each version,
  • Provide enough metadata so that it can be imported and bind with other data without errors,
  • If your dataset is a compilation of previously published datasets, please indicate in the description,

Information outdated or missing? Please open an issue or best do a correction and then a pull request.

Existing soil data projects and initiatives

Multiple international organizations from FAO’s Global Soil Partnership to UNCCD’s Land Degredation Neutrality, European Commission and similar, support soil data collation projects and especially curation of the legacy soil data. Some existing soil Observations and Measurements (O&M) soil data initiatives include:

UN’s FAO hosts International Network of Soil Information Institutions, which we recommend joining and actively contributing. INSII and FAO’s Global Soil Partnership aim at developing and hosting Global SoilInformation System (GLOSIS), although this does not serve yet any soil observations and measurements.

A more in-depth inventory of all various national and international soil datasets can be found in:

Target soil variables

Soil variables of interest include:

  1. Chemical soil properties:
  • Soil organic carbon, total carbon, total nitrogen,
  • Soil pH, effective Cation Exchange Capacity (eCEC),
  • Soil sodicity (presence of a high proportion of sodium ions relative to other cations),
  • Macro-nutrients: extractable — potassium (K), calcium (Ca), sodium (Na), magnesium (Mg) and similar,
  • Micro-nutrients: phosphorus (P), sulfur (S), iron (Fe), zinc (Zn) and similar,
  • Soil pollutants, heavy metals and similar,
  • Electrical conductivity,
  1. Physical soil properties:
  • Soil texture and texture fractions: silt, clay and sand, stone content,
  • Bulk density, depth to bedrock and similar,
  • Hydraulic conductivity, water content — Field Capacity (FC; the amount of water held in the soil after it has been fully wetted and free drainage has stopped), Permanent Wilting Point (PWP; the soil moisture condition at which the plant could not obtain water and would wilt and die), Plant Available Water Capacity (PAWC; the amount of water between field capacity and permanent wilting point water holding capacity) and similar,
  • Soil temperature,
  1. Soil biological / biodiversity variables:
  • Soil biomass,
  • Soil micro-, meso-, macro- and mega-fauna abundance,
  • Soil biodiversity indices,
  1. Soil classification / taxonomy variables:
  • Soil type,
  • Soi suitability classes, soil fertility classes,
  • Soil texture classes and families,
  1. Soil absorbances / soil spectroscopy variables:
  • Soil absorbance in VIS-NIR and MIR part of spectra,

Contributing

Please feel free to contribute entries. See GitHub repository for more detailed instructions.

Contributors

If you contribute, add also your name and Twitter, ORCID or blog link below:

Tomislav Hengl, Jonathan Sanderman, Mario Antonio Guevara Santamaria,

This document is based on the https://www.bigbookofr.com/ repository by Oscar Baruffa.

Disclaimer

The data is provided “as is”. OpenGeoHub foundation and its suppliers and licensors hereby disclaim all warranties of any kind, express or implied, including, without limitation, the warranties of merchantability, fitness for a particular purpose and non-infringement. Neither OpenGeoHub foundation nor its suppliers and licensors, makes any warranty that the Website will be error free or that access thereto will be continuous or uninterrupted. You understand that you download from, or otherwise obtain content or services through, the Website at your own discretion and risk.

Licence

Creative Commons License

This website/book is free to use, and is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License.

To cite this dataset please use:

@dataset{hengl_t_2023_4748499,
  author       = {Hengl, T. and Gupta, S. and Minarik, R.},
  title        = {{An Open Compendium of Soil Datasets: Soil Observations and Measurements}},
  year         = 2023,
  publisher    = {OpenGeoHub foundation},
  address      = {Wageningen},
  version      = {v0.2},
  doi          = {10.5281/zenodo.4748499},
  url          = {https://doi.org/10.5281/zenodo.4748499}
}

Literature

Some other connected publications and initiatives describing collation and import of legacy soil observations and measurements that might interest you:

About OpenGeoHub

OpenGeoHub logo

OpenGeoHub foundation is a not-for-profit research foundation located in Wageningen, the Netherlands. We specifically promote publishing and sharing of Open Geographical and Geoscientific Data, using and developing Open Source Software and encouraging and empowering under-represented researchers e.g. those from ODA recipient countries and female researchers. We believe that the key measure of quality of research in all sciences (and especially in geographical information sciences) is in transparency and reproducibility of the computer code used to generate results (read more in: “Everyone has a right to know what is happening with the planet”).

Acknowledgments

SoilSpec4GG is a USDA-funded Food and Agriculture Cyberinformatics Tools Coordinated Innovation Network NIFA Award #2020-67021-32467 project. It brings together soil scientists, spectroscopists, informaticians, data scientists and software engineers to overcome some of the current bottlenecks preventing wider and more efficient use of soil spectroscopy. For more info refer to: https://soilspectroscopy.org/

EcoDataCube.eu project is co-financed by the European Union (CEF Telecom project 2018-EU-IA-0095).

EarthMonitor.org project has received funding from the European Union’s Horizon Europe research an innovation programme under grant agreement No. 101059548.

AI4SoilHealth.eu project has received funding from the European Union’s Horizon Europe research an innovation programme under grant agreement No. 101086179.